Files
familienarchiv/ocr-service/main.py
Marcel a5979c4069 fix(ocr-service): fix ketos 7 segtrain compatibility and prevent OOM
Three issues fixed:

1. --resize both was removed in ketos 7; replaced with --resize union
   which extends the model's class mapping to include training data classes.

2. ketos ignores -s when -i is present, so the 1800px blla model caused
   7+ GB peak RAM and OOM-killed the host (no swap, 5 GB free).
   Now checks the loaded model's input height: only uses the base model
   when it was already fine-tuned at 800px; otherwise trains from scratch
   at 800px (~200 MB peak). After the first run the trained 800px model
   becomes the base for all subsequent fine-tuning runs.

3. segtrain now computes and returns cer = 1 - accuracy, matching the
   recognition training path.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-14 21:17:53 +02:00

558 lines
21 KiB
Python

"""OCR microservice — FastAPI app with Surya and Kraken engine support."""
import asyncio
import glob
import io
import json
import logging
import os
import re
import shutil
import subprocess
import tempfile
import zipfile
from contextlib import asynccontextmanager
from datetime import datetime, timezone
from urllib.parse import urlparse
import httpx
import pypdfium2 as pdfium
from fastapi import FastAPI, Header, HTTPException, UploadFile
from fastapi.responses import StreamingResponse
from PIL import Image
from confidence import apply_confidence_markers, get_threshold
from engines import kraken as kraken_engine
from engines import surya as surya_engine
from models import OcrBlock, OcrRequest
TRAINING_TOKEN = os.environ.get("TRAINING_TOKEN", "")
KRAKEN_MODEL_PATH = os.environ.get("KRAKEN_MODEL_PATH", "/app/models/german_kurrent.mlmodel")
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
_models_ready = False
ALLOWED_PDF_HOSTS = set(
h.strip() for h in os.getenv("ALLOWED_PDF_HOSTS", "minio,localhost,127.0.0.1").split(",")
)
def _validate_url(url: str) -> None:
"""Validate that the PDF URL points to an allowed host (SSRF protection)."""
parsed = urlparse(url)
hostname = parsed.hostname or ""
if hostname not in ALLOWED_PDF_HOSTS:
raise HTTPException(status_code=400, detail=f"PDF host not allowed: {hostname}")
@asynccontextmanager
async def lifespan(app: FastAPI):
"""Load lightweight models at startup. Surya loads lazily on first request."""
global _models_ready
logger.info("Loading Kraken model at startup (Surya loads lazily on first OCR request)...")
kraken_engine.load_models()
_models_ready = True
logger.info("Startup complete — ready to accept requests")
yield
logger.info("Shutting down OCR service")
app = FastAPI(title="Familienarchiv OCR Service", lifespan=lifespan)
@app.get("/health")
def health():
"""Health endpoint — returns 200 only after models are loaded."""
if not _models_ready:
raise HTTPException(status_code=503, detail="Models not loaded yet")
return {"status": "ok", "surya": True, "kraken": kraken_engine.is_available()}
@app.post("/ocr", response_model=list[OcrBlock])
async def run_ocr(request: OcrRequest):
"""Run OCR on a PDF document.
Downloads the PDF from the provided URL, converts pages to images,
and runs the appropriate OCR engine based on scriptType.
OCR engines run in a thread pool so the event loop stays free for /health.
"""
if not _models_ready:
raise HTTPException(status_code=503, detail="Models not loaded yet")
images = await _download_and_convert_pdf(request.pdfUrl)
script_type = request.scriptType.upper()
if script_type == "HANDWRITING_KURRENT":
if not kraken_engine.is_available():
raise HTTPException(
status_code=400,
detail="Kraken model not available — cannot process Kurrent script",
)
blocks = await asyncio.to_thread(kraken_engine.extract_blocks, images, request.language)
else:
# TYPEWRITER, HANDWRITING_LATIN, UNKNOWN — all use Surya
blocks = await asyncio.to_thread(surya_engine.extract_blocks, images, request.language)
threshold = get_threshold(script_type)
for block in blocks:
if block.get("words"):
block["text"] = apply_confidence_markers(block["words"], threshold)
block.pop("words", None)
return [OcrBlock(**b) for b in blocks]
@app.post("/ocr/stream")
async def run_ocr_stream(request: OcrRequest):
"""Run OCR on a PDF with NDJSON streaming — one JSON line per completed page.
When request.regions is provided, runs in guided mode: each region is cropped
and recognized individually, skipping full-page layout detection. The response
blocks include the annotationId from the region.
"""
if not _models_ready:
raise HTTPException(status_code=503, detail="Models not loaded yet")
images = await _download_and_convert_pdf(request.pdfUrl)
script_type = request.scriptType.upper()
threshold = get_threshold(script_type)
use_kraken = script_type == "HANDWRITING_KURRENT"
if use_kraken and not kraken_engine.is_available():
raise HTTPException(
status_code=400,
detail="Kraken model not available — cannot process Kurrent script",
)
engine = kraken_engine if use_kraken else surya_engine
if request.regions:
# Guided mode: recognize only the user-drawn annotation regions
regions_by_page: dict[int, list] = {}
for region in request.regions:
regions_by_page.setdefault(region.pageNumber, []).append(region)
async def generate_guided():
total_pages = len(images)
yield json.dumps({"type": "start", "totalPages": total_pages}) + "\n"
total_blocks = 0
skipped_pages = 0
for page_idx, image in enumerate(images, start=1):
page_regions = regions_by_page.get(page_idx, [])
if not page_regions:
yield json.dumps({
"type": "page",
"pageNumber": page_idx,
"blocks": [],
}) + "\n"
del image
continue
try:
blocks = []
for region in page_regions:
text = await asyncio.to_thread(
engine.extract_region_text, image,
region.x, region.y, region.width, region.height,
)
blocks.append({
"pageNumber": page_idx,
"x": region.x,
"y": region.y,
"width": region.width,
"height": region.height,
"polygon": None,
"text": text,
"annotationId": region.annotationId,
})
total_blocks += len(blocks)
yield json.dumps({
"type": "page",
"pageNumber": page_idx,
"blocks": blocks,
}) + "\n"
except Exception:
logger.exception("Guided OCR failed on page %d", page_idx)
skipped_pages += 1
yield json.dumps({
"type": "error",
"pageNumber": page_idx,
"message": f"Guided OCR processing failed on page {page_idx}",
}) + "\n"
finally:
del image
yield json.dumps({
"type": "done",
"totalBlocks": total_blocks,
"skippedPages": skipped_pages,
}) + "\n"
return StreamingResponse(
generate_guided(),
media_type="application/x-ndjson",
headers={"X-Accel-Buffering": "no", "Cache-Control": "no-cache"},
)
async def generate():
total_pages = len(images)
yield json.dumps({"type": "start", "totalPages": total_pages}) + "\n"
total_blocks = 0
skipped_pages = 0
for page_idx, image in enumerate(images, start=1):
try:
blocks = await asyncio.to_thread(
engine.extract_page_blocks, image, page_idx, request.language
)
for block in blocks:
if block.get("words"):
block["text"] = apply_confidence_markers(block["words"], threshold)
block.pop("words", None)
total_blocks += len(blocks)
yield json.dumps({
"type": "page",
"pageNumber": page_idx,
"blocks": blocks,
}) + "\n"
except Exception:
logger.exception("OCR failed on page %d", page_idx)
skipped_pages += 1
yield json.dumps({
"type": "error",
"pageNumber": page_idx,
"message": f"OCR processing failed on page {page_idx}",
}) + "\n"
finally:
del image
yield json.dumps({
"type": "done",
"totalBlocks": total_blocks,
"skippedPages": skipped_pages,
}) + "\n"
return StreamingResponse(
generate(),
media_type="application/x-ndjson",
headers={
"X-Accel-Buffering": "no",
"Cache-Control": "no-cache",
},
)
def _check_training_token(x_training_token: str | None) -> None:
"""Validate training token — fails closed when TRAINING_TOKEN is not configured."""
if not TRAINING_TOKEN:
raise HTTPException(status_code=503, detail="Training not configured on this node")
if x_training_token != TRAINING_TOKEN:
raise HTTPException(status_code=403, detail="Invalid or missing X-Training-Token")
def _validate_zip_entry(name: str, extract_dir: str) -> None:
"""Reject ZIP Slip attacks: path traversal and absolute paths."""
if os.path.isabs(name) or name.startswith(".."):
raise HTTPException(status_code=400, detail=f"Unsafe ZIP entry: {name}")
resolved = os.path.realpath(os.path.join(extract_dir, name))
if not resolved.startswith(os.path.realpath(extract_dir)):
raise HTTPException(status_code=400, detail=f"ZIP Slip detected: {name}")
def _rotate_backups(model_path: str, keep: int = 3) -> None:
"""Keep only the last `keep` timestamped backups of the model."""
pattern = model_path + ".*.bak"
backups = sorted(glob.glob(pattern))
for old in backups[:-keep]:
try:
os.remove(old)
except OSError:
logger.warning("Could not remove old backup: %s", old)
def _parse_best_checkpoint(checkpoint_dir: str) -> tuple[float | None, int]:
"""Parse checkpoint filenames to find the best validation metric and epoch count.
Kraken saves checkpoints as e.g. ``checkpoint_03-0.9500.ckpt``.
Returns (best_accuracy, epoch_count).
"""
pattern = re.compile(r"checkpoint_(\d+)-([0-9.]+)\.(ckpt|mlmodel)$")
best_acc: float | None = None
max_epoch = 0
for fname in os.listdir(checkpoint_dir):
m = pattern.match(fname)
if m:
epoch = int(m.group(1))
acc = float(m.group(2))
max_epoch = max(max_epoch, epoch)
if best_acc is None or acc > best_acc:
best_acc = acc
return best_acc, max_epoch
def _find_best_model(checkpoint_dir: str) -> str | None:
"""Return the best final model file produced by ketos train.
With --weights-format coreml, ketos writes ``best_<score>.mlmodel``.
Falls back to any .mlmodel in the directory.
"""
# Prefer the named best file (e.g. best_0.8256.mlmodel or best_0.8256.safetensors)
best_pattern = re.compile(r"best_([0-9.]+)\.(mlmodel|safetensors)$")
best_acc: float | None = None
best_path: str | None = None
for fname in os.listdir(checkpoint_dir):
m = best_pattern.match(fname)
if m:
acc = float(m.group(1))
if best_acc is None or acc > best_acc:
best_acc = acc
best_path = os.path.join(checkpoint_dir, fname)
if best_path:
return best_path
# Fallback: any .mlmodel file
for fname in os.listdir(checkpoint_dir):
if fname.endswith(".mlmodel"):
return os.path.join(checkpoint_dir, fname)
return None
@app.post("/train")
async def train_model(
file: UploadFile,
x_training_token: str | None = Header(default=None),
):
"""Fine-tune the Kurrent recognition model with uploaded training data.
Accepts a ZIP archive containing .png/.gt.txt training pairs exported
by the Java backend. Training mutates in-process model state — not safe
if the service is replicated.
"""
_check_training_token(x_training_token)
if not _models_ready:
raise HTTPException(status_code=503, detail="Models not loaded yet")
zip_bytes = await file.read()
training_run_id = datetime.now(timezone.utc).strftime("%Y%m%dT%H%M%SZ")
log = logging.LoggerAdapter(logger, {"training_run_id": training_run_id})
log.info("Starting training run %s", training_run_id)
def _run_training() -> dict:
with tempfile.TemporaryDirectory() as tmp_dir:
# Extract ZIP with safety checks
with zipfile.ZipFile(io.BytesIO(zip_bytes)) as zf:
for entry in zf.namelist():
_validate_zip_entry(entry, tmp_dir)
zf.extractall(tmp_dir)
log.info("Extracted %d ZIP entries to %s", len(os.listdir(tmp_dir)), tmp_dir)
ground_truth = glob.glob(os.path.join(tmp_dir, "*.xml"))
if not ground_truth:
raise HTTPException(status_code=422, detail="No ground-truth files found in ZIP")
log.info("Training on %d ground-truth pairs", len(ground_truth))
checkpoint_dir = os.path.join(tmp_dir, "checkpoints")
os.makedirs(checkpoint_dir, exist_ok=True)
cmd = [
"ketos", "--workers", "0", "--device", "cpu", "--threads", "2",
"train",
"-f", "page",
"--weights-format", "coreml",
"-o", checkpoint_dir,
"-q", "fixed",
"-N", "10",
"-B", "1",
]
if os.path.exists(KRAKEN_MODEL_PATH):
cmd += ["-i", KRAKEN_MODEL_PATH]
cmd += ground_truth
log.info("Running: %s", " ".join(cmd[:6]) + " ...")
proc = subprocess.run(cmd, capture_output=True, text=True)
log.info("ketos train stdout: %s", proc.stdout[-2000:] if proc.stdout else "")
if proc.stderr:
log.info("ketos train stderr: %s", proc.stderr[-2000:])
if proc.returncode != 0:
raise RuntimeError(f"ketos train failed (exit {proc.returncode}): {proc.stderr[-500:]}")
accuracy, epochs = _parse_best_checkpoint(checkpoint_dir)
cer = round(1.0 - accuracy, 4) if accuracy is not None else None
log.info("Training complete — epochs=%s accuracy=%s cer=%s", epochs, accuracy, cer)
# Find the best model file produced by training
best_model = _find_best_model(checkpoint_dir)
if best_model is None:
raise RuntimeError("Training produced no model file")
# Backup existing model and replace
if os.path.exists(KRAKEN_MODEL_PATH):
timestamp = datetime.now(timezone.utc).strftime("%Y%m%dT%H%M%SZ")
backup_path = f"{KRAKEN_MODEL_PATH}.{timestamp}.bak"
shutil.copy2(KRAKEN_MODEL_PATH, backup_path)
log.info("Backed up model to %s", backup_path)
_rotate_backups(KRAKEN_MODEL_PATH, keep=3)
shutil.copy2(best_model, KRAKEN_MODEL_PATH)
log.info("Replaced model at %s", KRAKEN_MODEL_PATH)
# Reload model in-process
kraken_engine.load_models()
log.info("Reloaded Kraken model in-process")
return {"loss": None, "accuracy": accuracy, "cer": cer, "epochs": epochs}
result = await asyncio.to_thread(_run_training)
return result
@app.post("/segtrain")
async def segtrain_model(
file: UploadFile,
x_training_token: str | None = Header(default=None),
):
"""Fine-tune the blla segmentation model with uploaded PAGE XML training data.
Accepts a ZIP archive containing .png/.xml (PAGE XML) training pairs exported
by the Java backend. Training mutates in-process model state — not safe
if the service is replicated.
"""
_check_training_token(x_training_token)
if not _models_ready:
raise HTTPException(status_code=503, detail="Models not loaded yet")
zip_bytes = await file.read()
training_run_id = datetime.now(timezone.utc).strftime("%Y%m%dT%H%M%SZ")
log = logging.LoggerAdapter(logger, {"training_run_id": training_run_id})
log.info("Starting segmentation training run %s", training_run_id)
blla_model_path = os.environ.get("BLLA_MODEL_PATH", "/app/models/blla.mlmodel")
def _run_segtrain() -> dict:
with tempfile.TemporaryDirectory() as tmp_dir:
with zipfile.ZipFile(io.BytesIO(zip_bytes)) as zf:
for entry in zf.namelist():
_validate_zip_entry(entry, tmp_dir)
zf.extractall(tmp_dir)
log.info("Extracted %d ZIP entries for segmentation training", len(os.listdir(tmp_dir)))
xml_files = glob.glob(os.path.join(tmp_dir, "*.xml"))
if not xml_files:
raise HTTPException(status_code=422, detail="No PAGE XML files found in ZIP")
log.info("Training on %d PAGE XML files", len(xml_files))
checkpoint_dir = os.path.join(tmp_dir, "checkpoints")
os.makedirs(checkpoint_dir, exist_ok=True)
cmd = [
"ketos", "--workers", "0", "--device", "cpu", "--threads", "2",
"segtrain",
"-o", checkpoint_dir,
"-q", "fixed",
"-N", "10",
]
# Train at 800px height. The default blla model uses 1800px, which peaks at
# ~7+ GB on CPU and kills the host (ketos ignores -s when -i is present, so
# we cannot override the height of an existing model).
# Strategy: only use the base model if it is already at 800px (i.e. was
# produced by a previous fine-tuning run here). Otherwise train from scratch —
# the first run bootstraps a 800px model; all subsequent runs fine-tune it.
seg_spec = (
"[1,800,0,3 Cr7,7,64,2,2 Gn32 Cr3,3,128,2,2 Gn32 Cr3,3,128 Gn32 "
"Cr3,3,256 Gn32 Cr3,3,256 Gn32 Lbx32 Lby32 Cr1,1,32 Gn32 Lby32 Lbx32]"
)
use_base_model = False
if os.path.exists(blla_model_path):
try:
from kraken.lib import vgsl as _vgsl
_m = _vgsl.TorchVGSLModel.load_model(blla_model_path)
use_base_model = _m.input[2] == 800 # input is (batch, channels, H, W)
if not use_base_model:
log.info(
"Base model height is %dpx — skipping -i to avoid OOM; "
"will train from scratch at 800px",
_m.input[2],
)
except Exception:
pass
if use_base_model:
cmd += ["-i", blla_model_path, "--resize", "union", "-s", seg_spec]
else:
cmd += ["-s", seg_spec]
cmd += xml_files
log.info("Running: %s", " ".join(cmd[:5]) + " ...")
proc = subprocess.run(cmd, capture_output=True, text=True)
log.info("ketos segtrain stdout: %s", proc.stdout[-2000:] if proc.stdout else "")
if proc.stderr:
log.info("ketos segtrain stderr: %s", proc.stderr[-2000:])
if proc.returncode != 0:
raise RuntimeError(f"ketos segtrain failed (exit {proc.returncode}): {proc.stderr[-500:]}")
accuracy, epochs = _parse_best_checkpoint(checkpoint_dir)
cer = round(1.0 - accuracy, 4) if accuracy is not None else None
log.info("Segmentation training complete — epochs=%s accuracy=%s cer=%s", epochs, accuracy, cer)
best_model = _find_best_model(checkpoint_dir)
if best_model is None:
raise RuntimeError("Segmentation training produced no model file")
if os.path.exists(blla_model_path):
timestamp = datetime.now(timezone.utc).strftime("%Y%m%dT%H%M%SZ")
backup_path = f"{blla_model_path}.{timestamp}.bak"
shutil.copy2(blla_model_path, backup_path)
_rotate_backups(blla_model_path, keep=3)
shutil.copy2(best_model, blla_model_path)
log.info("Replaced blla model at %s", blla_model_path)
return {"loss": None, "accuracy": accuracy, "cer": cer, "epochs": epochs}
result = await asyncio.to_thread(_run_segtrain)
return result
async def _download_and_convert_pdf(url: str) -> list[Image.Image]:
"""Download a PDF from a presigned URL and convert each page to a PIL Image."""
_validate_url(url)
async with httpx.AsyncClient(
timeout=httpx.Timeout(300.0), follow_redirects=False
) as client:
response = await client.get(url)
response.raise_for_status()
pdf = pdfium.PdfDocument(io.BytesIO(response.content))
images = []
for page_idx in range(len(pdf)):
page = pdf[page_idx]
# Render at 200 DPI — balances OCR quality vs memory usage
# (Surya 0.17 models use ~5GB idle; 300 DPI causes OOM on multi-page docs)
bitmap = page.render(scale=200 / 72)
pil_image = bitmap.to_pil()
images.append(pil_image)
return images